Pre-processing of the data

Exploring data

Batch effect correction

Varians and Median Histograms

Top variant genes

Clust on TOP GENES

## Warning: Missing column names filled in: 'X1' [1]
## Parsed with column specification:
## cols(
##   .default = col_double(),
##   X1 = col_character()
## )
## See spec(...) for full column specifications.

Correlation matrix with genes extracted by Clust

## Warning: Duplicated column names deduplicated: 'Genes' => 'Genes_1' [2], 'Genes'
## => 'Genes_2' [3], 'Genes' => 'Genes_3' [4]
## Parsed with column specification:
## cols(
##   Genes = col_character(),
##   Genes_1 = col_character(),
##   Genes_2 = col_character(),
##   Genes_3 = col_character()
## )

Deconvolution data

XCell

## Warning: Missing column names filled in: 'X1' [1]
## Parsed with column specification:
## cols(
##   .default = col_double(),
##   X1 = col_character()
## )
## See spec(...) for full column specifications.

CIBERSORT

quanTIseq

MCP counter